J4_9SS0_003
3D structure
- PDB id
- 9SS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9SS0|1|D1|C|576, 9SS0|1|D1|A|815, 9SS0|1|D1|C|817, 9SS0|1|D1|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SS0_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1239
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9SS0|1|D1|G|575
9SS0|1|D1|C|576
9SS0|1|D1|G|577
*
9SS0|1|D1|C|764
9SS0|1|D1|G|765
9SS0|1|D1|A|766
9SS0|1|D1|A|767
9SS0|1|D1|A|768
9SS0|1|D1|G|769
*
9SS0|1|D1|C|810
9SS0|1|D1|C|811
9SS0|1|D1|G|812
9SS0|1|D1|U|813
9SS0|1|D1|A|814
9SS0|1|D1|A|815
9SS0|1|D1|A|816
9SS0|1|D1|C|817
9SS0|1|D1|G|818
9SS0|1|D1|A|819
9SS0|1|D1|U|820
9SS0|1|D1|G|821
*
9SS0|1|D1|C|879
9SS0|1|D1|C|880
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AG
- Small ribosomal subunit protein uS8
- Chain AK
- Small ribosomal subunit protein uS12
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AP
- Small ribosomal subunit protein uS17
- Chain AT
- Small ribosomal subunit protein bS21
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