J4_9SS4_002

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9SS4|1|D2|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS4|1|D2|C|601
9SS4|1|D2|A|602
9SS4|1|D2|A|603
9SS4|1|D2|G|604
*
9SS4|1|D2|C|624
9SS4|1|D2|G|625
9SS4|1|D2|A|626
9SS4|1|D2|A|627
9SS4|1|D2|G|628
*
9SS4|1|D2|C|635
9SS4|1|D2|G|636
9SS4|1|D2|A|637
9SS4|1|D2|G|638
*
9SS4|1|D2|C|650
9SS4|1|D2|G|651
9SS4|1|D2|U|652
9SS4|1|D2|U|653
9SS4|1|D2|A|654
9SS4|1|D2|A|655
9SS4|1|D2|G|656

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B8

Large ribosomal subunit protein bL35

Chain BD

Large ribosomal subunit protein uL4

Chain BO

Large ribosomal subunit protein uL15