J4_9SS4_007

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS4_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0867

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9SS4|1|D2|A|1772
9SS4|1|D2|A|1773
9SS4|1|D2|C|1774
9SS4|1|D2|U|1775
9SS4|1|D2|G|1776
*
9SS4|1|D2|C|1788
9SS4|1|D2|A|1789
9SS4|1|D2|C|1790
9SS4|1|D2|A|1791
9SS4|1|D2|G|1792
*
9SS4|1|D2|U|1827
9SS4|1|D2|G|1828
9SS4|1|D2|A|1829
9SS4|1|D2|C|1830
*
9SS4|1|D2|G|1975
9SS4|1|D2|U|1976
9SS4|1|D2|A|1977
9SS4|1|D2|A|1978
9SS4|1|D2|U|1979

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2