J4_9SS5_003

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9SS5|1|D2|G|1271, 9SS5|1|D2|A|1272, 9SS5|1|D2|U|1273, 9SS5|1|D2|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS5_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1319

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9SS5|1|D2|C|1270
9SS5|1|D2|G|1271
9SS5|1|D2|A|1272
9SS5|1|D2|U|1273
9SS5|1|D2|A|1274
9SS5|1|D2|A|1275
9SS5|1|D2|A|1276
*
9SS5|1|D2|U|1294
9SS5|1|D2|C|1295
*
9SS5|1|D2|G|1645
9SS5|1|D2|C|1646
9SS5|1|D2|U|1647
9SS5|1|D2|U|1648
*
9SS5|1|D2|A|2009
9SS5|1|D2|G|2010

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BQ

Large ribosomal subunit protein bL17

Chain BV

Large ribosomal subunit protein uL22