J4_9SS6_006

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9SS6|1|D2|G|1271, 9SS6|1|D2|A|1272, 9SS6|1|D2|U|1273, 9SS6|1|D2|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SS6_006 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1273

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9SS6|1|D2|C|1270
9SS6|1|D2|G|1271
9SS6|1|D2|A|1272
9SS6|1|D2|U|1273
9SS6|1|D2|A|1274
9SS6|1|D2|A|1275
9SS6|1|D2|A|1276
*
9SS6|1|D2|U|1294
9SS6|1|D2|C|1295
*
9SS6|1|D2|G|1645
9SS6|1|D2|C|1646
9SS6|1|D2|U|1647
9SS6|1|D2|U|1648
*
9SS6|1|D2|A|2009
9SS6|1|D2|G|2010

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BQ

Large ribosomal subunit protein bL17

Chain BV

Large ribosomal subunit protein uL22