J4_9SS6_012
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9SS6|1|D2|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SS6_012 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.3032
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SS6|1|D2|C|2285
9SS6|1|D2|G|2286
9SS6|1|D2|A|2287
9SS6|1|D2|A|2288
9SS6|1|D2|G|2289
*
9SS6|1|D2|U|2343
9SS6|1|D2|U|2344
9SS6|1|D2|G|2345
9SS6|1|D2|A|2346
9SS6|1|D2|C|2347
*
9SS6|1|D2|G|2370
9SS6|1|D2|G|2371
9SS6|1|D2|U|2372
*
9SS6|1|D2|A|2381
9SS6|1|D2|G|2382
9SS6|1|D2|G|2383
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain B6
- Large ribosomal subunit protein bL33
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BR
- Large ribosomal subunit protein uL18
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