J4_9SUM_003

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

9SUM|1|A|A|1395, 9SUM|1|A|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.2

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

9

Unit IDs

9SUM|1|A|C|1394
9SUM|1|A|A|1395
9SUM|1|A|A|1396
9SUM|1|A|A|1397
9SUM|1|A|U|1398
9SUM|1|A|A|1399
9SUM|1|A|U|1400
*
9SUM|1|A|A|1418
9SUM|1|A|G|1419
*
9SUM|1|A|U|1819
9SUM|1|A|G|1820
9SUM|1|A|A|1821
9SUM|1|A|U|1822
*
9SUM|1|A|A|2267
9SUM|1|A|G|2268

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L17-B

Chain T

Ribosomal protein L19

Chain f

60S ribosomal protein L31-A