J4_9SUM_004
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9SUM|1|A|G|1466
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.2
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SUM|1|A|G|1435
9SUM|1|A|G|1436
9SUM|1|A|U|1437
9SUM|1|A|U|1438
9SUM|1|A|C|1439
*
9SUM|1|A|G|1463
9SUM|1|A|G|1464
9SUM|1|A|U|1465
9SUM|1|A|G|1466
9SUM|1|A|A|1467
9SUM|1|A|G|1468
*
9SUM|1|A|C|1556
9SUM|1|A|U|1557
*
9SUM|1|A|A|1771
9SUM|1|A|G|1772
9SUM|1|A|U|1773
9SUM|1|A|C|1774
9SUM|1|A|G|1775
9SUM|1|A|U|1776
9SUM|1|A|A|1777
9SUM|1|A|C|1778
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- Ribosomal protein L19
- Chain Z
- Large ribosomal subunit protein uL23
- Chain i
- 60S ribosomal protein L34-B
- Chain l
- Ribosomal protein L37
- Chain m
- Large ribosomal subunit protein eL38
- Chain n
- Large ribosomal subunit protein eL39
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