J4_9SUM_009
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9SUM|1|A|A|2557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.4
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SUM|1|A|C|2554
9SUM|1|A|U|2555
9SUM|1|A|A|2556
9SUM|1|A|A|2557
9SUM|1|A|G|2558
*
9SUM|1|A|U|2612
9SUM|1|A|U|2613
9SUM|1|A|G|2614
9SUM|1|A|A|2615
9SUM|1|A|U|2616
*
9SUM|1|A|A|2640
9SUM|1|A|C|2641
9SUM|1|A|C|2642
*
9SUM|1|A|G|2651
9SUM|1|A|U|2652
9SUM|1|A|G|2653
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L5
- Chain V
- 60S ribosomal protein L21-A
- Chain d
- 60S ribosomal protein L29
- Chain q
- 60S ribosomal protein L44
Coloring options: