J4_9SYR_004

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9SYR|1|L1|A|2366, 9SYR|1|L1|U|2369, 9SYR|1|L1|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|OMC|2365
9SYR|1|L1|A|2366
9SYR|1|L1|A|2367
9SYR|1|L1|A|2368
9SYR|1|L1|U|2369
9SYR|1|L1|A|2370
9SYR|1|L1|U|2371
*
9SYR|1|L1|A|2389
9SYR|1|L1|G|2390
9SYR|1|L1|G|2391
*
9SYR|1|L1|OMC|2824
9SYR|1|L1|A|2825
9SYR|1|L1|U|2826
9SYR|1|L1|G|2827
9SYR|1|L1|U|2828
9SYR|1|L1|U|2829
*
9SYR|1|L1|A|3856
9SYR|1|L1|G|3857

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L17

Chain Li

60S ribosomal protein L19

Chain Lu

60S ribosomal protein L31

Chain Nb

Isoform 2 of Transcription factor BTF3