J4_9SYR_010

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9SYR|1|L1|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|C|3696
9SYR|1|L1|U|3697
9SYR|1|L1|G|3698
*
9SYR|1|L1|C|3752
9SYR|1|L1|G|3753
*
9SYR|1|L1|C|3771
9SYR|1|L1|U|3772
9SYR|1|L1|U|3773
9SYR|1|L1|A|3774
9SYR|1|L1|A|3775
9SYR|1|L1|G|3776
9SYR|1|L1|G|3777
9SYR|1|L1|U|3778
9SYR|1|L1|A|3779
9SYR|1|L1|G|3780
*
9SYR|1|L1|U|3814
9SYR|1|L1|G|3815
9SYR|1|L1|A|3816
9SYR|1|L1|A|3817
9SYR|1|L1|UY1|3818
9SYR|1|L1|G|3819

Current chains

Chain L1

28S rRNA

Nearby chains

Chain La

60S ribosomal protein L8

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain S3

Transfer RNA; tRNA

Chain Sq

60S ribosomal protein L41