J4_9SYR_013

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

9SYR|1|S1|G|407

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|98
9SYR|1|S1|A2M|99
9SYR|1|S1|U|100
9SYR|1|S1|U|101
9SYR|1|S1|A|102
9SYR|1|S1|A|103
9SYR|1|S1|A|104
9SYR|1|S1|PSU|105
9SYR|1|S1|C|106
*
9SYR|1|S1|G|355
9SYR|1|S1|C|356
9SYR|1|S1|C|357
*
9SYR|1|S1|G|405
9SYR|1|S1|PSU|406
9SYR|1|S1|G|407
9SYR|1|S1|A|408
9SYR|1|S1|C|409
*
9SYR|1|S1|G|431
9SYR|1|S1|G|432

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S8

Chain SD

40S ribosomal protein S11

Chain Sg

Small ribosomal subunit protein uS12

Chain Sw

Small ribosomal subunit protein eS4, X isoform