J4_9SYR_014
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9SYR|1|S1|A|672, 9SYR|1|S1|A|1083
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SYR|1|S1|A|671
9SYR|1|S1|A|672
9SYR|1|S1|G|673
*
9SYR|1|S1|C|1032
9SYR|1|S1|G|1033
9SYR|1|S1|A|1034
9SYR|1|S1|A|1035
9SYR|1|S1|A|1036
9SYR|1|S1|G|1037
*
9SYR|1|S1|C|1078
9SYR|1|S1|C|1079
9SYR|1|S1|A|1080
9SYR|1|S1|PSU|1081
9SYR|1|S1|A|1082
9SYR|1|S1|A|1083
9SYR|1|S1|A|1084
9SYR|1|S1|C|1085
9SYR|1|S1|G|1086
9SYR|1|S1|A|1087
9SYR|1|S1|U|1088
9SYR|1|S1|G|1089
*
9SYR|1|S1|U|1160
9SYR|1|S1|U|1161
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein L37a
- Chain SD
- 40S ribosomal protein S11
- Chain SF
- 40S ribosomal protein S13
- Chain SG
- 40S ribosomal protein S14
- Chain Sf
- 40S ribosomal protein S15a
- Chain Sg
- Small ribosomal subunit protein uS12
- Chain Sj
- 40S ribosomal protein S26
- Chain Sq
- 60S ribosomal protein L41
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