J4_9T4R_006

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T4R_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0866

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9T4R|1|a|C|340
9T4R|1|a|G|341
9T4R|1|a|A|342
9T4R|1|a|A|343
9T4R|1|a|U|344
*
9T4R|1|a|A|359
9T4R|1|a|A|360
9T4R|1|a|U|361
9T4R|1|a|C|362
*
9T4R|1|a|G|366
9T4R|1|a|A|367
9T4R|1|a|A|368
*
9T4R|1|a|U|380
9T4R|1|a|G|381
9T4R|1|a|U|382
9T4R|1|a|A|383
9T4R|1|a|G|384

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24