J4_9T4R_007

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|a|C|644
9T4R|1|a|A|645
9T4R|1|a|A|646
9T4R|1|a|G|647
*
9T4R|1|a|C|669
9T4R|1|a|G|670
9T4R|1|a|U|671
9T4R|1|a|A|672
9T4R|1|a|G|673
*
9T4R|1|a|C|680
9T4R|1|a|G|681
9T4R|1|a|A|682
9T4R|1|a|G|683
*
9T4R|1|a|C|695
9T4R|1|a|G|696
9T4R|1|a|U|697
9T4R|1|a|U|698
9T4R|1|a|U|699
9T4R|1|a|A|700
9T4R|1|a|G|701

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15