J4_9T4R_008
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 9T4R|1|a|G|1309, 9T4R|1|a|A|1310, 9T4R|1|a|A|1312, 9T4R|1|a|G|1689
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9T4R_008 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.4395
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9T4R|1|a|C|1308
9T4R|1|a|G|1309
9T4R|1|a|A|1310
9T4R|1|a|A|1311
9T4R|1|a|A|1312
9T4R|1|a|G|1313
*
9T4R|1|a|C|1331
9T4R|1|a|C|1332
*
9T4R|1|a|G|1687
9T4R|1|a|A|1688
9T4R|1|a|G|1689
9T4R|1|a|C|1690
*
9T4R|1|a|G|2034
9T4R|1|a|G|2035
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: