J4_9T4R_010

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9T4R|1|a|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T4R_010 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1337

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9T4R|1|a|U|1350
9T4R|1|a|C|1351
*
9T4R|1|a|G|1375
9T4R|1|a|G|1376
9T4R|1|a|U|1377
9T4R|1|a|U|1378
9T4R|1|a|A|1379
9T4R|1|a|G|1380
*
9T4R|1|a|C|1441
9T4R|1|a|C|1442
*
9T4R|1|a|G|1639
9T4R|1|a|C|1640
9T4R|1|a|C|1641
9T4R|1|a|C|1642
9T4R|1|a|G|1643
9T4R|1|a|U|1644
9T4R|1|a|A|1645

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23