J4_9T4R_012

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T4R_012 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0653

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9T4R|1|a|G|1797
9T4R|1|a|A|1798
9T4R|1|a|C|1799
9T4R|1|a|U|1800
9T4R|1|a|G|1801
*
9T4R|1|a|C|1813
9T4R|1|a|A|1814
9T4R|1|a|C|1815
9T4R|1|a|A|1816
9T4R|1|a|G|1817
*
9T4R|1|a|U|1852
9T4R|1|a|G|1853
9T4R|1|a|A|1854
9T4R|1|a|C|1855
*
9T4R|1|a|G|2000
9T4R|1|a|U|2001
9T4R|1|a|A|2002
9T4R|1|a|A|2003
9T4R|1|a|C|2004

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2