J4_9T4R_015

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|a|G|2668
9T4R|1|a|A|2669
9T4R|1|a|G|2670
9T4R|1|a|C|2671
*
9T4R|1|a|G|2699
9T4R|1|a|A|2700
9T4R|1|a|C|2701
*
9T4R|1|a|G|2756
9T4R|1|a|G|2757
9T4R|1|a|A|2758
9T4R|1|a|C|2759
9T4R|1|a|G|2760
*
9T4R|1|a|C|2794
9T4R|1|a|C|2795
9T4R|1|a|C|2796

Current chains

Chain a

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain U

Large ribosomal subunit protein uL14

Chain d

Large ribosomal subunit protein uL3