J4_9TEX_005

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9TEX|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEX_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2794

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TEX|1|a|C|268
9TEX|1|a|C|269
*
9TEX|1|a|G|370
9TEX|1|a|A|371
9TEX|1|a|G|372
9TEX|1|a|U|373
9TEX|1|a|A|374
9TEX|1|a|G|375
*
9TEX|1|a|U|399
9TEX|1|a|G|400
9TEX|1|a|A|401
9TEX|1|a|A|402
9TEX|1|a|U|403
9TEX|1|a|A|404
9TEX|1|a|U|405
9TEX|1|a|G|406
*
9TEX|1|a|C|421
9TEX|1|a|A|422
9TEX|1|a|A|423
9TEX|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28