J4_9TEY_007

3D structure

PDB id

9TEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the terminating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9TEY|1|V|G|1271, 9TEY|1|V|A|1272, 9TEY|1|V|U|1273, 9TEY|1|V|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEY_007 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1219

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.1

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

9TEY|1|V|C|1270
9TEY|1|V|G|1271
9TEY|1|V|A|1272
9TEY|1|V|U|1273
9TEY|1|V|A|1274
9TEY|1|V|A|1275
9TEY|1|V|A|1276
*
9TEY|1|V|U|1294
9TEY|1|V|C|1295
*
9TEY|1|V|G|1645
9TEY|1|V|C|1646
9TEY|1|V|U|1647
9TEY|1|V|U|1648
*
9TEY|1|V|A|2009
9TEY|1|V|G|2010

Current chains

Chain V

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32