J4_9TEZ_001

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9TEZ|1|V|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEZ_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2785

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TEZ|1|V|C|268
9TEZ|1|V|C|269
*
9TEZ|1|V|G|370
9TEZ|1|V|A|371
9TEZ|1|V|G|372
9TEZ|1|V|U|373
9TEZ|1|V|A|374
9TEZ|1|V|G|375
*
9TEZ|1|V|U|399
9TEZ|1|V|G|400
9TEZ|1|V|A|401
9TEZ|1|V|A|402
9TEZ|1|V|U|403
9TEZ|1|V|A|404
9TEZ|1|V|U|405
9TEZ|1|V|G|406
*
9TEZ|1|V|C|421
9TEZ|1|V|A|422
9TEZ|1|V|A|423
9TEZ|1|V|G|424

Current chains

Chain V

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28