J4_9TI9_014
3D structure
- PDB id
- 9TI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9TI9|1|a|C|584
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9TI9_014 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1238
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9TI9|1|a|G|583
9TI9|1|a|C|584
9TI9|1|a|G|585
*
9TI9|1|a|C|772
9TI9|1|a|G|773
9TI9|1|a|A|774
9TI9|1|a|A|775
9TI9|1|a|A|776
9TI9|1|a|G|777
*
9TI9|1|a|C|818
9TI9|1|a|C|819
9TI9|1|a|G|820
9TI9|1|a|U|821
9TI9|1|a|A|822
9TI9|1|a|A|823
9TI9|1|a|A|824
9TI9|1|a|C|825
9TI9|1|a|G|826
9TI9|1|a|A|827
9TI9|1|a|U|828
9TI9|1|a|G|829
*
9TI9|1|a|C|888
9TI9|1|a|C|889
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
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