J4_9TZ5_006

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UC*GGUGAG*CU*AACCGUA

Length

17 nucleotides

Bulged bases

9TZ5|1|a|G|1351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZ5_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1916

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9TZ5|1|a|U|1323
9TZ5|1|a|C|1324
*
9TZ5|1|a|G|1348
9TZ5|1|a|G|1349
9TZ5|1|a|U|1350
9TZ5|1|a|G|1351
9TZ5|1|a|A|1352
9TZ5|1|a|G|1353
*
9TZ5|1|a|C|1414
9TZ5|1|a|U|1415
*
9TZ5|1|a|A|1612
9TZ5|1|a|A|1613
9TZ5|1|a|C|1614
9TZ5|1|a|C|1615
9TZ5|1|a|G|1616
9TZ5|1|a|U|1617
9TZ5|1|a|A|1618

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23

Chain y

Large ribosomal subunit protein bL34