J4_9TZ5_008

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZ5_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0699

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9TZ5|1|a|G|1786
9TZ5|1|a|A|1787
9TZ5|1|a|C|1788
9TZ5|1|a|U|1789
9TZ5|1|a|G|1790
*
9TZ5|1|a|C|1802
9TZ5|1|a|A|1803
9TZ5|1|a|C|1804
9TZ5|1|a|A|1805
9TZ5|1|a|G|1806
*
9TZ5|1|a|U|1841
9TZ5|1|a|G|1842
9TZ5|1|a|A|1843
9TZ5|1|a|C|1844
*
9TZ5|1|a|G|1991
9TZ5|1|a|U|1992
9TZ5|1|a|A|1993
9TZ5|1|a|A|1994
9TZ5|1|a|C|1995

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2