J4_9TZ9_001

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

9TZ9|1|a|U|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZ9_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2097

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TZ9|1|a|C|272
9TZ9|1|a|C|273
*
9TZ9|1|a|G|375
9TZ9|1|a|A|376
9TZ9|1|a|G|377
9TZ9|1|a|U|378
9TZ9|1|a|A|379
9TZ9|1|a|G|380
*
9TZ9|1|a|U|404
9TZ9|1|a|G|405
9TZ9|1|a|A|406
9TZ9|1|a|A|407
9TZ9|1|a|C|408
9TZ9|1|a|A|409
9TZ9|1|a|U|410
9TZ9|1|a|G|411
*
9TZ9|1|a|C|426
9TZ9|1|a|A|427
9TZ9|1|a|A|428
9TZ9|1|a|G|429

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL28

Chain q

Large ribosomal subunit protein bL9