J4_9TZ9_010
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CAAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9TZ9|1|a|A|2304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9TZ9_010 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.2372
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9TZ9|1|a|C|2301
9TZ9|1|a|A|2302
9TZ9|1|a|A|2303
9TZ9|1|a|A|2304
9TZ9|1|a|G|2305
*
9TZ9|1|a|U|2359
9TZ9|1|a|U|2360
9TZ9|1|a|G|2361
9TZ9|1|a|A|2362
9TZ9|1|a|C|2363
*
9TZ9|1|a|G|2386
9TZ9|1|a|G|2387
9TZ9|1|a|U|2388
*
9TZ9|1|a|A|2397
9TZ9|1|a|G|2398
9TZ9|1|a|G|2399
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein uL18
- Chain 8
- Large ribosomal subunit protein bL27
- Chain z
- Large ribosomal subunit protein bL35
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