J4_9TZE_003
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUCAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9TZE|1|A|C|573, 9TZE|1|A|A|812, 9TZE|1|A|C|814, 9TZE|1|A|A|816
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9TZE_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1114
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9TZE|1|A|G|572
9TZE|1|A|C|573
9TZE|1|A|G|574
*
9TZE|1|A|C|761
9TZE|1|A|G|762
9TZE|1|A|A|763
9TZE|1|A|A|764
9TZE|1|A|A|765
9TZE|1|A|G|766
*
9TZE|1|A|C|807
9TZE|1|A|C|808
9TZE|1|A|G|809
9TZE|1|A|U|810
9TZE|1|A|C|811
9TZE|1|A|A|812
9TZE|1|A|A|813
9TZE|1|A|C|814
9TZE|1|A|G|815
9TZE|1|A|A|816
9TZE|1|A|U|817
9TZE|1|A|G|818
*
9TZE|1|A|C|875
9TZE|1|A|C|876
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- Small ribosomal subunit protein uS15
- Chain Q
- Small ribosomal subunit protein uS17
- Chain U
- Small ribosomal subunit protein bS21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: