J4_9TZE_004

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

9TZE|1|a|U|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZE_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2098

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TZE|1|a|C|272
9TZE|1|a|C|273
*
9TZE|1|a|G|375
9TZE|1|a|A|376
9TZE|1|a|G|377
9TZE|1|a|U|378
9TZE|1|a|A|379
9TZE|1|a|G|380
*
9TZE|1|a|U|404
9TZE|1|a|G|405
9TZE|1|a|A|406
9TZE|1|a|A|407
9TZE|1|a|C|408
9TZE|1|a|A|409
9TZE|1|a|U|410
9TZE|1|a|G|411
*
9TZE|1|a|C|426
9TZE|1|a|A|427
9TZE|1|a|A|428
9TZE|1|a|G|429

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL28

Chain q

Large ribosomal subunit protein bL9