J4_9UWH_008
3D structure
- PDB id
- 9UWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosome trapped by retapamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9UWH|1|AA|A|942, 9UWH|1|AA|A|1103, 9UWH|1|AA|C|1106, 9UWH|1|AA|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9UWH_008 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.255
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9UWH|1|AA|G|941
9UWH|1|AA|A|942
9UWH|1|AA|G|943
*
9UWH|1|AA|C|1052
9UWH|1|AA|A|1053
9UWH|1|AA|A|1054
9UWH|1|AA|U|1055
9UWH|1|AA|A|1056
9UWH|1|AA|G|1057
*
9UWH|1|AA|C|1098
9UWH|1|AA|C|1099
9UWH|1|AA|C|1100
9UWH|1|AA|U|1101
9UWH|1|AA|A|1102
9UWH|1|AA|A|1103
9UWH|1|AA|A|1104
9UWH|1|AA|C|1105
9UWH|1|AA|C|1106
9UWH|1|AA|U|1107
9UWH|1|AA|C|1108
9UWH|1|AA|A|1109
*
9UWH|1|AA|U|1132
9UWH|1|AA|C|1133
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A2
- Small ribosomal subunit protein mS37
- Chain A3
- Small ribosomal subunit protein mS38
- Chain AI
- Small ribosomal subunit protein uS11m
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain AL
- Small ribosomal subunit protein uS15m
- Chain AN
- Small ribosomal subunit protein uS17m
- Chain AQ
- MRPS21 isoform 1
- Chain AT
- Small ribosomal subunit protein mS25
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