J4_9UZL_001

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9UZL|1|2|G|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|98
9UZL|1|2|A|99
9UZL|1|2|U|100
9UZL|1|2|U|101
9UZL|1|2|A|102
9UZL|1|2|A|103
9UZL|1|2|A|104
9UZL|1|2|U|105
9UZL|1|2|C|106
*
9UZL|1|2|G|345
9UZL|1|2|C|346
9UZL|1|2|C|347
*
9UZL|1|2|G|395
9UZL|1|2|U|396
9UZL|1|2|G|397
9UZL|1|2|A|398
9UZL|1|2|C|399
*
9UZL|1|2|G|421
9UZL|1|2|G|422

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17

Chain Z

Small ribosomal subunit protein uS12