J4_9UZM_001

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9UZM|1|2|G|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZM|1|2|C|98
9UZM|1|2|A|99
9UZM|1|2|U|100
9UZM|1|2|U|101
9UZM|1|2|A|102
9UZM|1|2|A|103
9UZM|1|2|A|104
9UZM|1|2|U|105
9UZM|1|2|C|106
*
9UZM|1|2|G|345
9UZM|1|2|C|346
9UZM|1|2|C|347
*
9UZM|1|2|G|395
9UZM|1|2|U|396
9UZM|1|2|G|397
9UZM|1|2|A|398
9UZM|1|2|C|399
*
9UZM|1|2|G|421
9UZM|1|2|G|422

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17

Chain Z

Small ribosomal subunit protein uS12