J4_9VTH_001

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9VTH|1|11|G|363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9VTH_001 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.1167

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.5

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

5

Unit IDs

9VTH|1|11|C|100
9VTH|1|11|A|101
9VTH|1|11|U|102
9VTH|1|11|U|103
9VTH|1|11|A|104
9VTH|1|11|A|105
9VTH|1|11|A|106
9VTH|1|11|U|107
9VTH|1|11|C|108
*
9VTH|1|11|G|311
9VTH|1|11|C|312
9VTH|1|11|C|313
*
9VTH|1|11|G|361
9VTH|1|11|U|362
9VTH|1|11|G|363
9VTH|1|11|A|364
9VTH|1|11|C|365
*
9VTH|1|11|G|387
9VTH|1|11|G|388

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S23

Chain SN

40S ribosomal protein S11

Chain SQ

40S ribosomal protein S4

Chain ST

40S ribosomal protein S8