J4_9VTH_005
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAAUAU*AG*CGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9VTH|1|14|A|1463, 9VTH|1|14|U|1466
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VTH_005 not in the Motif Atlas
- Homologous match to J4_9H3G_003
- Geometric discrepancy: 0.1061
- The information below is about J4_9H3G_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.2
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
9VTH|1|14|C|1462
9VTH|1|14|A|1463
9VTH|1|14|A|1464
9VTH|1|14|A|1465
9VTH|1|14|U|1466
9VTH|1|14|A|1467
9VTH|1|14|U|1468
*
9VTH|1|14|A|1486
9VTH|1|14|G|1487
*
9VTH|1|14|C|1883
9VTH|1|14|G|1884
9VTH|1|14|A|1885
9VTH|1|14|U|1886
*
9VTH|1|14|A|2355
9VTH|1|14|G|2356
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L17-1 isoform X2
- Chain LW
- Ribosomal protein L19
- Chain Lf
- 60S ribosomal protein L31
Coloring options: