J4_9VTH_006
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9VTH|1|14|U|1534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VTH_006 not in the Motif Atlas
- Homologous match to J4_9H3G_004
- Geometric discrepancy: 0.1148
- The information below is about J4_9H3G_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.2
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9VTH|1|14|G|1503
9VTH|1|14|G|1504
9VTH|1|14|U|1505
9VTH|1|14|U|1506
9VTH|1|14|C|1507
*
9VTH|1|14|G|1531
9VTH|1|14|G|1532
9VTH|1|14|U|1533
9VTH|1|14|U|1534
9VTH|1|14|A|1535
9VTH|1|14|G|1536
*
9VTH|1|14|C|1619
9VTH|1|14|C|1620
*
9VTH|1|14|G|1835
9VTH|1|14|G|1836
9VTH|1|14|U|1837
9VTH|1|14|C|1838
9VTH|1|14|G|1839
9VTH|1|14|U|1840
9VTH|1|14|A|1841
9VTH|1|14|C|1842
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LM
- Large ribosomal subunit protein uL23
- Chain LW
- Ribosomal protein L19
- Chain Li
- Large ribosomal subunit protein eL34
- Chain Lk
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L38
- Chain Lm
- 60S ribosomal protein L39-3
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