J4_9VTH_008

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*UU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9VTH_008 not in the Motif Atlas

Homologous match to J4_9H3G_006

Geometric discrepancy: 0.1165

The information below is about J4_9H3G_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9VTH|1|14|G|1678
9VTH|1|14|G|1679
*
9VTH|1|14|U|1697
9VTH|1|14|U|1698
*
9VTH|1|14|A|1757
9VTH|1|14|G|1758
*
9VTH|1|14|U|1778
9VTH|1|14|C|1779

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LW

Ribosomal protein L19

Chain LZ

Large ribosomal subunit protein eL22

Chain Li

Large ribosomal subunit protein eL34

Chain Ll

60S ribosomal protein L38