J4_9VTH_009
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VTH_009 not in the Motif Atlas
- Homologous match to J4_9PN5_006
- Geometric discrepancy: 0.0656
- The information below is about J4_9PN5_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.4
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9VTH|1|14|G|2134
9VTH|1|14|A|2135
9VTH|1|14|C|2136
9VTH|1|14|U|2137
9VTH|1|14|G|2138
*
9VTH|1|14|C|2150
9VTH|1|14|A|2151
9VTH|1|14|A|2152
9VTH|1|14|A|2153
9VTH|1|14|G|2154
*
9VTH|1|14|U|2189
9VTH|1|14|G|2190
9VTH|1|14|A|2191
9VTH|1|14|U|2192
9VTH|1|14|U|2193
*
9VTH|1|14|A|2320
9VTH|1|14|U|2321
9VTH|1|14|U|2322
9VTH|1|14|A|2323
9VTH|1|14|A|2324
9VTH|1|14|C|2325
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 11
- Small subunit ribosomal RNA; SSU rRNA
- Chain LB
- 60S ribosomal protein L8-like
- Chain Lo
- 60s ribosomal protein l41-like
- Chain Lq
- 60S ribosomal protein L37a
Coloring options: