J4_9VTH_010
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9VTH|1|14|U|2317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VTH_010 not in the Motif Atlas
- Homologous match to J4_8GLP_010
- Geometric discrepancy: 0.0991
- The information below is about J4_8GLP_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_21738.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|14|C|2195
9VTH|1|14|U|2196
9VTH|1|14|G|2197
*
9VTH|1|14|C|2251
9VTH|1|14|G|2252
*
9VTH|1|14|C|2270
9VTH|1|14|U|2271
9VTH|1|14|U|2272
9VTH|1|14|A|2273
9VTH|1|14|A|2274
9VTH|1|14|G|2275
9VTH|1|14|G|2276
9VTH|1|14|U|2277
9VTH|1|14|A|2278
9VTH|1|14|G|2279
*
9VTH|1|14|U|2313
9VTH|1|14|G|2314
9VTH|1|14|A|2315
9VTH|1|14|A|2316
9VTH|1|14|U|2317
9VTH|1|14|G|2318
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 11
- Small subunit ribosomal RNA; SSU rRNA
- Chain 16
- Transfer RNA; tRNA
- Chain LB
- 60S ribosomal protein L8-like
- Chain Lo
- 60s ribosomal protein l41-like
Coloring options: