J4_9VTH_012

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

9VTH|1|14|A|2660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9VTH_012 not in the Motif Atlas

Homologous match to J4_9H3G_010

Geometric discrepancy: 0.0819

The information below is about J4_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.4

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9VTH|1|14|C|2657
9VTH|1|14|U|2658
9VTH|1|14|A|2659
9VTH|1|14|A|2660
9VTH|1|14|G|2661
*
9VTH|1|14|U|2715
9VTH|1|14|U|2716
9VTH|1|14|G|2717
9VTH|1|14|A|2718
9VTH|1|14|U|2719
*
9VTH|1|14|A|2743
9VTH|1|14|C|2744
9VTH|1|14|C|2745
*
9VTH|1|14|G|2754
9VTH|1|14|U|2755
9VTH|1|14|G|2756

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L5-like

Chain LY

60S ribosomal protein L21-1-like

Chain Ld

60S ribosomal protein L29

Chain Lp

60S ribosomal protein L44