J4_9VTH_013

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAA*UC*GCU*GGG

Length

11 nucleotides

Bulged bases

9VTH|1|14|C|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9VTH_013 not in the Motif Atlas

Homologous match to J4_9H3G_011

Geometric discrepancy: 0.1098

The information below is about J4_9H3G_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.4

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9VTH|1|14|U|3012
9VTH|1|14|A|3013
9VTH|1|14|A|3014
*
9VTH|1|14|U|3044
9VTH|1|14|C|3045
*
9VTH|1|14|G|3100
9VTH|1|14|C|3101
9VTH|1|14|U|3102
*
9VTH|1|14|G|3136
9VTH|1|14|G|3137
9VTH|1|14|G|3138

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LG

60S ribosomal protein L13a-4

Chain LH

60S ribosomal protein L23