J4_9VVI_003
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9VVI|1|A|C|576, 9VVI|1|A|A|815, 9VVI|1|A|C|817, 9VVI|1|A|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VVI_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1072
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|A|G|575
9VVI|1|A|C|576
9VVI|1|A|G|577
*
9VVI|1|A|C|764
9VVI|1|A|G|765
9VVI|1|A|A|766
9VVI|1|A|A|767
9VVI|1|A|A|768
9VVI|1|A|G|769
*
9VVI|1|A|C|810
9VVI|1|A|C|811
9VVI|1|A|G|812
9VVI|1|A|U|813
9VVI|1|A|A|814
9VVI|1|A|A|815
9VVI|1|A|A|816
9VVI|1|A|C|817
9VVI|1|A|G|818
9VVI|1|A|A|819
9VVI|1|A|U|820
9VVI|1|A|G|821
*
9VVI|1|A|C|879
9VVI|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- Small ribosomal subunit protein uS15
- Chain Q
- Small ribosomal subunit protein uS17
- Chain U
- 30S ribosomal protein S21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: