J4_9VXM_008
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9VXM|1|AA|A|942, 9VXM|1|AA|A|1103, 9VXM|1|AA|C|1106, 9VXM|1|AA|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VXM_008 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.2561
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9VXM|1|AA|G|941
9VXM|1|AA|A|942
9VXM|1|AA|G|943
*
9VXM|1|AA|C|1052
9VXM|1|AA|A|1053
9VXM|1|AA|A|1054
9VXM|1|AA|U|1055
9VXM|1|AA|A|1056
9VXM|1|AA|G|1057
*
9VXM|1|AA|C|1098
9VXM|1|AA|C|1099
9VXM|1|AA|C|1100
9VXM|1|AA|U|1101
9VXM|1|AA|A|1102
9VXM|1|AA|A|1103
9VXM|1|AA|A|1104
9VXM|1|AA|C|1105
9VXM|1|AA|C|1106
9VXM|1|AA|U|1107
9VXM|1|AA|C|1108
9VXM|1|AA|A|1109
*
9VXM|1|AA|U|1132
9VXM|1|AA|C|1133
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A3
- Small ribosomal subunit protein mS38
- Chain AJ
- Small ribosomal subunit protein uS12m
- Chain AL
- Small ribosomal subunit protein uS15m
- Chain AN
- Small ribosomal subunit protein uS17m
- Chain AT
- Small ribosomal subunit protein mS25
- Chain C
- Small ribosomal subunit protein bS21m
- Chain G
- Small ribosomal subunit protein mS37
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