J4_9W0N_003
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9W0N|1|1|G|1271, 9W0N|1|1|A|1272, 9W0N|1|1|U|1273, 9W0N|1|1|A|1274, 9W0N|1|1|A|1275, 9W0N|1|1|C|1646, 9W0N|1|1|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9W0N_003 not in the Motif Atlas
- Homologous match to J4_8B0X_007
- Geometric discrepancy: 0.1605
- The information below is about J4_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9W0N|1|1|C|1270
9W0N|1|1|G|1271
9W0N|1|1|A|1272
9W0N|1|1|U|1273
9W0N|1|1|A|1274
9W0N|1|1|A|1275
9W0N|1|1|A|1276
*
9W0N|1|1|U|1294
9W0N|1|1|C|1295
*
9W0N|1|1|G|1645
9W0N|1|1|C|1646
9W0N|1|1|U|1647
9W0N|1|1|U|1648
*
9W0N|1|1|A|2009
9W0N|1|1|G|2010
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein bL32
- Chain n
- Large ribosomal subunit protein bL17
- Chain s
- Large ribosomal subunit protein uL22
Coloring options: