J4_9W0N_011
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 9W0N|1|3|C|183, 9W0N|1|3|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9W0N_011 not in the Motif Atlas
- Homologous match to J4_8B0X_002
- Geometric discrepancy: 0.1883
- The information below is about J4_8B0X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9W0N|1|3|G|142
9W0N|1|3|A|143
9W0N|1|3|G|144
*
9W0N|1|3|C|178
9W0N|1|3|A|179
9W0N|1|3|U|180
9W0N|1|3|A|181
9W0N|1|3|A|182
9W0N|1|3|C|183
9W0N|1|3|G|184
*
9W0N|1|3|C|193
9W0N|1|3|C|194
9W0N|1|3|A|195
9W0N|1|3|A|196
9W0N|1|3|A|197
9W0N|1|3|G|198
*
9W0N|1|3|U|219
9W0N|1|3|G|220
9W0N|1|3|C|221
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Y
- Small ribosomal subunit protein bS20
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