J4_9W0N_012
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9W0N|1|3|C|576, 9W0N|1|3|A|815, 9W0N|1|3|C|817, 9W0N|1|3|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9W0N_012 not in the Motif Atlas
- Homologous match to J4_8B0X_003
- Geometric discrepancy: 0.0821
- The information below is about J4_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|G|575
9W0N|1|3|C|576
9W0N|1|3|G|577
*
9W0N|1|3|C|764
9W0N|1|3|G|765
9W0N|1|3|A|766
9W0N|1|3|A|767
9W0N|1|3|A|768
9W0N|1|3|G|769
*
9W0N|1|3|C|810
9W0N|1|3|C|811
9W0N|1|3|G|812
9W0N|1|3|U|813
9W0N|1|3|A|814
9W0N|1|3|A|815
9W0N|1|3|A|816
9W0N|1|3|C|817
9W0N|1|3|G|818
9W0N|1|3|A|819
9W0N|1|3|U|820
9W0N|1|3|G|821
*
9W0N|1|3|C|879
9W0N|1|3|C|880
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- Small ribosomal subunit protein uS8
- Chain Q
- Small ribosomal subunit protein uS12
- Chain T
- Small ribosomal subunit protein uS15
- Chain V
- Small ribosomal subunit protein uS17
- Chain Z
- Small ribosomal subunit protein bS21
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