J4_9W0N_013
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9W0N|1|5|U|47, 9W0N|1|5|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9W0N_013 not in the Motif Atlas
- Homologous match to J4_7U2J_014
- Geometric discrepancy: 0.4463
- The information below is about J4_7U2J_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9W0N|1|5|A|7
9W0N|1|5|U|8
9W0N|1|5|A|9
9W0N|1|5|G|10
*
9W0N|1|5|C|25
9W0N|1|5|A|26
9W0N|1|5|G|27
*
9W0N|1|5|C|43
9W0N|1|5|G|44
9W0N|1|5|U|45
9W0N|1|5|G|46
9W0N|1|5|U|47
9W0N|1|5|C|48
9W0N|1|5|C|49
*
9W0N|1|5|G|65
9W0N|1|5|U|66
Current chains
- Chain 5
- tRNA(Phe)
Nearby chains
- Chain 0
- Elongation factor G
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- Large ribosomal subunit protein uL16
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