J4_9WNQ_001

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9WNQ|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNQ_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5157

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9WNQ|1|A|G|115
9WNQ|1|A|A|116
9WNQ|1|A|G|117
9WNQ|1|A|U|118
9WNQ|1|A|A|119
9WNQ|1|A|A|120
9WNQ|1|A|U|121
9WNQ|1|A|G|122
*
9WNQ|1|A|U|239
9WNQ|1|A|G|240
*
9WNQ|1|A|C|286
9WNQ|1|A|U|287
9WNQ|1|A|A|288
9WNQ|1|A|G|289
*
9WNQ|1|A|C|311
9WNQ|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17