J4_9WNQ_008
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WNQ_008 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.1161
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9WNQ|1|b|G|297
9WNQ|1|b|G|298
9WNQ|1|b|A|299
9WNQ|1|b|A|300
9WNQ|1|b|G|301
*
9WNQ|1|b|C|316
9WNQ|1|b|G|317
9WNQ|1|b|C|318
9WNQ|1|b|G|319
*
9WNQ|1|b|C|323
9WNQ|1|b|A|324
9WNQ|1|b|G|325
*
9WNQ|1|b|C|337
9WNQ|1|b|G|338
9WNQ|1|b|U|339
9WNQ|1|b|A|340
9WNQ|1|b|C|341
Current chains
- Chain b
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain v
- 50S ribosomal protein L24
Coloring options: