J4_9WNQ_012
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9WNQ|1|b|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WNQ_012 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.2558
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9WNQ|1|b|U|1313
9WNQ|1|b|C|1314
*
9WNQ|1|b|G|1338
9WNQ|1|b|G|1339
9WNQ|1|b|U|1340
9WNQ|1|b|G|1341
9WNQ|1|b|A|1342
9WNQ|1|b|G|1343
*
9WNQ|1|b|C|1404
9WNQ|1|b|U|1405
*
9WNQ|1|b|A|1597
9WNQ|1|b|A|1598
9WNQ|1|b|U|1599
9WNQ|1|b|C|1600
9WNQ|1|b|G|1601
9WNQ|1|b|U|1602
9WNQ|1|b|A|1603
Current chains
- Chain b
- 23S ribosomal RNA
Nearby chains
- Chain u
- Large ribosomal subunit protein uL23
Coloring options: