J4_9WNQ_014

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNQ_014 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0944

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9WNQ|1|b|A|1772
9WNQ|1|b|A|1773
9WNQ|1|b|C|1774
9WNQ|1|b|U|1775
9WNQ|1|b|G|1776
*
9WNQ|1|b|C|1788
9WNQ|1|b|A|1789
9WNQ|1|b|C|1790
9WNQ|1|b|A|1791
9WNQ|1|b|G|1792
*
9WNQ|1|b|U|1827
9WNQ|1|b|G|1828
9WNQ|1|b|A|1829
9WNQ|1|b|C|1830
*
9WNQ|1|b|G|1975
9WNQ|1|b|U|1976
9WNQ|1|b|A|1977
9WNQ|1|b|A|1978
9WNQ|1|b|U|1979

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2